INSCT – scRNAseq Integration with Triplet Neural Networks

INSCT

:: DESCRIPTION

INSCT (INtegration of millions of Single Cells using batch-aware Triplet networks) is a deep learning algorithm which calculates an integrated embedding for scRNA-seq data.

::DEVELOPER

Bioinformatics and Systems Medicine Laboratory

:: SCREENSHOTS

n/a

:: REQUIREMENTS

Linux
Python

:: DOWNLOAD

INSCT

:: MORE INFORMATION

Citation:

Simon, L.M., Wang, YY. & Zhao, Z.
Integration of millions of transcriptomes using batch-aware triplet neural networks.
Nat Mach Intell 3, 705–715 (2021).
https://doi.org/10.1038/s42256-021-00361-8

SuperTriplets 1.1 – Triplet-based Supertree Approach to Phylogenomics

SuperTriplets 1.1

:: DESCRIPTION

SuperTriplets is a triplet-based supertree approach to phylogenomics. It infers supertrees with branch support values.

::DEVELOPER

SuperTriplets team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
Java

:: DOWNLOAD

SuperTriplets

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Jun 15;26(12):i115-23. doi: 10.1093/bioinformatics/btq196.
SuperTriplets: a triplet-based supertree approach to phylogenomics.
Ranwez V1, Criscuolo A, Douzery EJ.

tqDist 1.0.2 – a Triplet and Quartet Distance Library

tqDist 1.0.2

:: DESCRIPTION

tqDist is a software package for computing the triplet and quartet distances between general rooted or unrooted trees, respectively.

::DEVELOPER

Christian N. S. Pedersen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / MacOsX
R / Python

:: DOWNLOAD

tqDist

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 10. [Epub ahead of print]
tqDist: a library for computing the quartet and triplet distances between binary or general trees.
Sand A1, Holt MK, Johansen J, Brodal GS, Mailund T, Pedersen CN.