Phobius /PolyPhobius 1.05 – Combined Transmembrane Topology & Signal Peptide Predictor

Phobius /PolyPhobius 1.05

:: DESCRIPTION

Phobius /PolyPhobius is for prediction of transmembrane topology and signal peptides from the amino acid sequence of a protein.

::DEVELOPER

Sonnhammer Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

Phobius

:: MORE INFORMATION

Citation:

Phobius is described in:

  • Lukas Käll, Anders Krogh and Erik L. L. Sonnhammer.
    A Combined Transmembrane Topology and Signal Peptide Prediction Method.
    Journal of Molecular Biology, 338(5):1027-1036, May 2004.
    (doi) (PubMed)

PolyPhobius is described in:

  • Lukas Käll, Anders Krogh and Erik Sonnhammer.
    An HMM posterior decoder for sequence feature prediction that includes homology information
    Bioinformatics, 21 (Suppl 1):i251-i257, June 2005.
    (doi) (PubMed)

 

Philius – Predict Protein Transmembrane Topology and Signal Peptides

Philius

:: DESCRIPTION

Philius predicts protein transmembrane topology and signal peptides.

::DEVELOPER

Noble Research Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Philius

:: MORE INFORMATION

Citation:

Transmembrane topology and signal peptide prediction using dynamic Bayesian networks
Sheila M. Reynolds, Lukas K?ll, Michael E. Riffle, Jeff A. Bilmes and William Stafford Noble
PLoS Computational Biology. 4(11):e1000213, 2008.