Tag: Transformation

PSSM-DT – Identifying DNA-binding proteins by combining Support Vector Machine and PSSM Distance Transformation

PSSM-DT

:: DESCRIPTION

SVM-PSSM-DT is a web server for for identifying the DNA-binding proteins by combining Support Vector Machine and PSSM Distance Transformation.

::DEVELOPER

Bin Liu’s lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Syst Biol. 2015;9 Suppl 1:S10. doi: 10.1186/1752-0509-9-S1-S10. Epub 2015 Feb 6.
Identifying DNA-binding proteins by combining support vector machine and PSSM distance transformation.
Xu R, Zhou J, Wang H, He Y, Wang X, Liu B.

HaploSearch – Haplotype-sequence Two-way Transformation

HaploSearch

:: DESCRIPTION

HaploSearch is a simple tool for transforming DNA sequences into haplotype data and vice versa, speeding up the manipulation of large datasets.

::DEVELOPER

Sergio Delgado Quintero

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

HaploSearch

:: MORE INFORMATION

Citation

Mitochondrion. 2011 Mar;11(2):366-7. doi: 10.1016/j.mito.2010.11.001. Epub 2010 Nov 6.
HaploSearch: a tool for haplotype-sequence two-way transformation.
Fregel R1, Delgado S.

vsn 3.61.0 – Normalization and Variance Stabilizing Transformation of Microarray data

vsn 3.61.0

:: DESCRIPTION

vsn (Variance-stabilizing normalization) implements a method for normalising microarray intensities, both between colours within array, and between arrays.

::DEVELOPER

Huber Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ WIndows/MacOsX
  • R package
  • BioConductor

:: DOWNLOAD

  vsn

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2008 Feb;36(2):e11. doi: 10.1093/nar/gkm1075. Epub 2008 Jan 4.
Model-based variance-stabilizing transformation for Illumina microarray data.
Lin SM, Du P, Huber W, Kibbe WA.

ExpressConverter 2.1 – Microarray Data Files Transformation Tool

ExpressConverter 2.1

:: DESCRIPTION

ExpressConverter is a file transformation tool that reads microarray data files in a variety of file formats and generates TIGR MultiExperiment Viewer file (.mev) as output so that the microarray data can be uploaded to the database with MADAM and analyzed with MIDAS and MEV.

::DEVELOPER

Dana-Farber Cancer Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX / Windows

:: DOWNLOAD

 ExpressConverter

:: MORE INFORMATION