Tag: Track

AnCorr – Genome Track Analyzer

AnCorr

:: DESCRIPTION

AnCorr is the set of tools for genome-wide study of genomic features and their correlations.The tools is designed to compare genome tracks by robust method with their attribution relative to DNA strands.

::DEVELOPER

AnCorr team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Genome-wide study of correlations between genomic features and their relationship with the regulation of gene expression.
Kravatsky YV, Chechetkin VR, Tchurikov NA, Kravatskaya GI.
DNA Res. 2015 Feb;22(1):109-19. doi: 10.1093/dnares/dsu044.

rtracklayer 1.52.0 – R interface to Genome Browsers and their Annotation Tracks

rtracklayer 1.52.0

:: DESCRIPTION

The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R.

:: DEVELOPER

Michael Lawrence <michafla@gene.com>, Vincent J Carey, Robert Gentleman

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX/Windows
  • R package
  • BioConductor

:: DOWNLOAD

 rtracklayer

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Jul 15;25(14):1841-2. doi: 10.1093/bioinformatics/btp328..
rtracklayer: an R package for interfacing with genome browsers.
Lawrence M, Gentleman R, Carey V.
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trackViewer 1.26.2 – Minimalist design for Plotting Elegant Track Layers

trackViewer 1.26.2

:: DESCRIPTION

trackViewer is a R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data.

::DEVELOPER

Program in Gene Function and Expression@umassmed

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • BioConductor
  • R package

:: DOWNLOAD

trackViewer

:: MORE INFORMATION

Citation:

Ou J, Zhu LJ.
trackViewer: a Bioconductor package for interactive and integrative visualization of multi-omics data.
Nat Methods. 2019 Jun;16(6):453-454. doi: 10.1038/s41592-019-0430-y. PMID: 31133757.

AxonTracker 1.0 – Track and Label Axon Structures

AxonTracker 1.0

:: DESCRIPTION

AxonTracker is useful to semi-automatically track and label axon structures from the motor axon connectome datasets. It is a parameter-free software, and hence can be used over a broad range of datasets.The software is designed with ease of use in mind. The interface is simple and includes a 3D visualization of the dataset along with a real-time overlay of the tracking results. A 2D view of the dataset is also provided in order to interact with the software. Three orthogonal views are provided with a provision for back-tracking the results. Points can be added/deleted from the tracking results to provide guidance in case of an error.

::DEVELOPER

TMHRI Center for Bioengineering and Informatics

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

AxonTracker

:: MORE INFORMATION

The download and usage is free for academic and non-commercial purposes and if used in research and publications, it should be referenced.