deTS v1.0 – Tissue-Specific Enrichment Analysis

deTS v1.0

:: DESCRIPTION

deTS is an R package to identify the most relevant tissues for candidate genes or for gene expression profiles.

::DEVELOPER

Bioinformatics and Systems Medicine Laboratory

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux
  • R

:: DOWNLOAD

deTS

:: MORE INFORMATION

Citation:

Pei G, Dai Y, Zhao Z, Jia P.
deTS: tissue-specific enrichment analysis to decode tissue specificity.
Bioinformatics. 2019 Oct 1;35(19):3842-3845. doi: 10.1093/bioinformatics/btz138. PMID: 30824912; PMCID: PMC6761978.

MultiFinder – Meta-analysis Discovery of Tissue-specific DNA Sequence Motifs

MultiFinder

:: DESCRIPTION

MultiFinder performs automated motif searching using four different profile-based motif finders, including AlignACE, MDscan, BioProspector and MEME.

::DEVELOPER

The Bulyk Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • Perl

:: DOWNLOAD

  MultiFinder

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2006 Apr 27;7:229.
Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.
Huber BR, Bulyk ML.