Jolecule 2.0 – HTML5 Web-based Three-Dimensional Protein and DNA Renderer

Jolecule 2.0

:: DESCRIPTION

Jolecule is a HTML5 viewer for protein molecules. It is written in Javascript and is designed to be deployed on web pages. Jolecule provides a plugin mode that is meant to work in embedded in an arbitrary web page.

::DEVELOPER

Bosco Ho.

:: SCREENSHOTS

Jolecule

:: REQUIREMENTS

  • HTML5 suportted Web Browser 

:: DOWNLOAD

 Jolecule

:: MORE INFORMATION

SCL 1.0 – Three-dimensional Chromosome Structures from Single-cell Hi-C data

SCL 1.0

:: DESCRIPTION

SCL (Single-Cell Lattice) is a computational method to reconstruct high-resolution 3D chromosome structures based on the zero-inflated single-cell Hi-C data.

::DEVELOPER

Z. WANG LAB

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

SCL

:: MORE INFORMATION

Citation

Zhu H, Wang Z.
SCL: a lattice-based approach to infer 3D chromosome structures from single-cell Hi-C data.
Bioinformatics. 2019 Oct 15;35(20):3981-3988. doi: 10.1093/bioinformatics/btz181. PMID: 30865261; PMCID: PMC6792089.

J3DPSV 1.0 – Java Three-dimensional (3D) Protein Structure Viewer

J3DPSV 1.0

:: DESCRIPTION

J3dPSV is a graphical application package for viewing and modeling of three dimensional structures of protein structure, including multiple chain sequence table and a three-dimensional (3D) protein structure viewer.

:: DEVELOPER

Hyun Seok Park

:: SCREENSHOTS

J3DPSV

:: REQUIREMENTS

  • Windows/ Linux / MacOsX
  • JAVA

:: DOWNLOAD

 J3DPSV

:: MORE INFORMATION

Citation

Chun, Yoo Jin, Il Ham, Seong, Yang, San Duk, Rhie, Arang, Park, Hyun Seok
Refactoring the code for visualizing protein database information in a 3D viewer for software reusability
Genomics & Informatics, 6:50-53, MAR 31 2008