PROSPECT 2.0 – Threading-based Protein Structure Prediction System

PROSPECT 2.0

:: DESCRIPTION

PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit) is a threading-based protein structure prediction system. PROSPECT is designed particularly for the recognization of the fold template whose sequence has insignificant homology to the target sequence.

PROSPECT Online Version

::DEVELOPER

Protein Informatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/MacOsX
libxml2
BlastPGP

:: DOWNLOAD

PROSPECT

:: MORE INFORMATION

Citation

D. Kim, D. Xu, J. Guo, K. Ellrott, Ying Xu,
“PROSPECT II: protein structure prediction program for genome-scale application“,
Protein Engineering, 16 (9), 641 – 650, 2003

THREADER 3.51 – Protein Fold Recognition by Threading

THREADER 3.51

:: DESCRIPTION

THREADER is a software of threading which is an approach to fold recognition which used a detailed 3-D representation of protein structure. The idea was to physically “thread” a sequence of amino acid side chains onto a backbone structure (a fold) and to evaluate this proposed 3-D structure using a set of pair potentials and (importantly) a separate solvation potential.

:DEVELOPER

Bioinformatics Group – University College London

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

THREADER

:: MORE INFORMATION

Citation:

Jones, D.T., Miller, R.T. & Thornton, J.M. (1995)
Successful protein fold recognition by optimal sequence threading validated by rigorous blind testing.
Proteins. 23, 387-397.