TfReg 5.3

:: DESCRIPTION

TfReg implements the calculation of Peyrard-Bishop style Hamiltonians to obtain some physical properties of DNA and RNA duplexes. The method uses the transfer matrix technique for the calculation of the classical partition function. Also, TfReg calculates the regression of experimental versus predicted melting temperatures using the equivalent melting index.

::DEVELOPER

Gerald Weber

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• OpenSuse

:: DOWNLOAD

 TfReg

:: MORE INFORMATION

Citation

Bioinformatics. 2013 May 15;29(10):1345-7. doi: 10.1093/bioinformatics/btt133. Epub 2013 Mar 16.
TfReg: calculating DNA and RNA melting temperatures and opening profiles with mesoscopic models.
Weber G.