TFM-CUDA 0.5 – CUDA tools for Position Weight Matrices (PWMs)

TFM-CUDA 0.5

:: DESCRIPTION

TFM-CUDA is a CUDA implementation of parallel algorithms able to:

scan a matrix or a set of matrices against a sequence (see also TFM-Scan),
compute the P-value corresponding to a score, or the score corresponding to a Pvalue (see also TFM-Pvalue),
compare two matrices

::DEVELOPER

Bonsai Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/MacOsX/Windows
C++ Compiler
NVIDIA CUDA SDK

:: MORE INFORMATION

Citation

Mathieu Giraud and Jean-Stéphane Varré,
Parallel Position Weight Matrices Algorithms,
Parallel Computing, 10.1016/j.parco.2010.10.001