iPARTS 2 – A Tool of Improved/ Pairwise Alignment of RNA Tertiary Structures

iPARTS2

:: DESCRIPTION

iPARTS2 (improved PARTS) is an improved web server for aligning two RNA 3D structures based on a structural alphabet (SA)-based approach.

::DEVELOPER

Chih-Wei Wang, Kun-Tze Chen and Chin Lung Lu.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Yang CH, Shih CT, Chen KT, Lee PH, Tsai PH, Lin JC, Yen CY, Lin TY, Lu CL.
iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2.
Nucleic Acids Res. 2016 Jul 8;44(W1):W328-32. doi: 10.1093/nar/gkw412. Epub 2016 May 16. PMID: 27185896; PMCID: PMC4987943.

iPARTS: an improved tool of pairwise alignment of RNA tertiary structures.
Wang CW, Chen KT, Lu CL.
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W340-7. doi: 10.1093/nar/gkq483.

PINTS – Patterns In Non-homologous Tertiary Structures

PINTS

:: DESCRIPTION

PINTS finds reoccuring three-dimensional patterns of amino acids. These amino-acids are close in space but not necessarily close or co-linear in sequence, for example the serine-protease catalytic triad. Unlike other tools, PINTS does not aim to find proteins adopting a similar fold.