:: DESCRIPTION
ncRNAClassifier is a tool enabling the identification of repetitive elements in precursor ncRNA sequences.
::DEVELOPER
EVRY RNA – IBISC
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2012 Sep 25;13:246. doi: 10.1186/1471-2105-13-246.
ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins.
Tempel S1, Pollet N, Tahi F.
:: DESCRIPTION
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances from Next Generation Sequencing Data.
:: DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Jeong HH, Yalamanchili HK, Guo C, Shulman JM, Liu Z.
An ultra-fast and scalable quantification pipeline for transposable elements from next generation sequencing data.
Pac Symp Biocomput. 2018;23:168-179. PMID: 29218879.
:: DESCRIPTION
TEclass classifies unknown transpsosable element (TE) consensus sequences into four categories, according to their mechanism of transposition: DNA transposons, LTRs, LINEs, SINEs.
::DEVELOPER
Institute of Bioinformatics WWU Muenster
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Abrusan G., Grundmann N., DeMeester L., Makalowski W. 2009.
TEclass: a tool for automated classification of unknown eukaryotic transposable elements.
Bioinformatics 25:1329-1330
