COPLA – Taxonomic Classifier of Plasmids

COPLA

:: DESCRIPTION

COPLA is an application for plasmid classification in Plasmid Taxonomic Units (PTUs).

:: DEVELOPER

irycis Bioinfo

:: REQUIREMENTS

  • Linux / Window
  • Perl

:: DOWNLOAD

COPLA

:: MORE INFORMATION

Citation

Redondo-Salvo S, Bartomeus-Peñalver R, Vielva L, Tagg KA, Webb HE, Fernández-López R, de la Cruz F.
COPLA, a taxonomic classifier of plasmids.
BMC Bioinformatics. 2021 Jul 31;22(1):390. doi: 10.1186/s12859-021-04299-x. PMID: 34332528; PMCID: PMC8325299.

CSSSCL 1.0 – A Taxonomic Classifier for DNA Sequences.

CSSSCL 1.0

:: DESCRIPTION

CSSSCL is a python package that uses Combined Sequence Similarity Scores for accurate taxonomic CLassification of long and short reads.

::DEVELOPER

CSSSCL team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 CSSSCL

:: MORE INFORMATION

Citation:

CSSSCL: a python package that uses Combined Sequence Similarity Scores for accurate taxonomic CLassification of long and short sequence reads.
Borozan I, Ferretti V.
Bioinformatics. 2015 Oct 9. pii: btv587.