:: DESCRIPTION
TAMER is an R package for accurate taxonomic assignment of metagenomic sequencing reads.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
PLoS One. 2012;7(10):e46450. doi: 10.1371/journal.pone.0046450. Epub 2012 Oct 1.
A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads.
Jiang H1, An L, Lin SM, Feng G, Qiu Y.
:: DESCRIPTION
TANGO is a tool for the optimal taxonomic assignment of ambiguous pyrosequencing reads.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2014 Jan 1;30(1):17-23. doi: 10.1093/bioinformatics/btt256. Epub 2013 May 3.
Further steps in TANGO: improved taxonomic assignment in metagenomics.
Alonso-Alemany D1, Barré A, Beretta S, Bonizzoni P, Nikolski M, Valiente G.
BMC Bioinformatics. 2011 Jan 7;12:8. doi: 10.1186/1471-2105-12-8.
Flexible taxonomic assignment of ambiguous sequencing reads.
Clemente JC, Jansson J, Valiente G.
:: DESCRIPTION
RITA (Rapid Identification of Taxonomic Assignments) is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with compositional classifications from a Naive Bayes classifier, RITA is able to achieve very high accuracy on short reads. Unlike other hybrid approaches which combine these predictions for all sequences to be classified, RITA uses a pipeline to first identify cases where both types of classifier are in agreement, which constitute the highest-confidence set. Sequences not classified in this manner are subjected to a series of downstream classification steps.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
MacDonald NJ, Parks DH, and Beiko RG.
Rapid identification of high-confidence taxonomic assignments for metagenomic data
Nucl. Acids Res. (2012) doi: 10.1093/nar/gks335 April 4, 2012.
