TAEC – an R package for Taxonomic Analysis by Elimination and Correction

TAEC

:: DESCRIPTION

TAEC, a new homology-based approach for taxonomic analysis, utilizes the similarity in the genomic sequence in addition to the result of an alignment tool.

::DEVELOPER

Lingling An

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R

:: DOWNLOAD

 TAEC

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Jul 16;15:242. doi: 10.1186/1471-2105-15-242.
Accurate genome relative abundance estimation for closely related species in a metagenomic sample.
Sohn MB, An L1, Pookhao N, Li Q.

PhyloSift 1.0.1 – Phylogenetic and Taxonomic Analysis for Genomes and Metagenomes

PhyloSift 1.0.1

:: DESCRIPTION

PhyloSift is a suite of software tools to conduct phylogenetic analysis of genomes and metagenomes.

::DEVELOPER

The Darling Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /MacOsX

:: DOWNLOAD

 PhyloSift

:: MORE INFORMATION

Citation

PhyloSift: phylogenetic analysis of genomes and metagenomes.
Darling AE, Jospin G, Lowe E, Matsen FA 4th, Bik HM, Eisen JA.
PeerJ. 2014 Jan 9;2:e243. doi: 10.7717/peerj.243.