Tag: Targets

miRror 2.0 – A Dual View on Sets of MicroRNAs and their Targets

miRror 2.0

:: DESCRIPTION

miRror Suite is an analysis tools for the cooperative regulation by microRNAs on gene sets and pathways

PSI-miRror: Probability Supported Iterative miRror

::DEVELOPER

miRror team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Database (Oxford). 2014 Jun 6;2014. pii: bau043. doi: 10.1093/database/bau043. Print 2014.
miRror-Suite: decoding coordinated regulation by microRNAs.
Friedman Y, Karsenty S, Linial M

J Bioinform Comput Biol. 2013 Dec;11(6):1343012. doi: 10.1142/S0219720013430129.
miRror2.0: a platform for assessing the joint action of microRNAs in cell regulation.
Friedman Y, Linial M.

TargetS – microRNA Target Prediction in Different Gene Regions

TargetS

:: DESCRIPTION

TargetS is a novel computational approach for predicting miRNA targets with the target sites located along entire gene sequences, which permits finding additional targets that are not located in the 3′ un-translated regions.

::DEVELOPER

Yin Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / WIndows
  • Python

:: DOWNLOAD

 TargetS

:: MORE INFORMATION

Citation

Identifying microRNA targets in different gene regions.
Xu W, San Lucas A, Wang Z, Liu Y.
BMC Bioinformatics. 2014;15 Suppl 7:S4. doi: 10.1186/1471-2105-15-S7-S4.

TargetS – Predictor for Targeting Protein-ligand Binding Sites

TargetS

:: DESCRIPTION

TargetS is a new ligand-specific template-free predictor for targeting protein-ligand binding sites from primary sequences.

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):994-1008. doi: 10.1109/TCBB.2013.104.
Designing template-free predictor for targeting protein-ligand binding sites with classifier ensemble and spatial clustering.
Dong-Jun Yu, Jun Hu, Jing Yang, Hong-Bin Shen, Jinhui Tang, and Jing-Yu Yang,