GLAPD – Whole Genome based LAMP Primer Design for a set of Target Genome

GLAPD

:: DESCRIPTION

GLAPD can design LAMPP(Loop-mediated isothermal amplification) primer sets based on a whole genome. It can also design LAMP primers for a set of target genomes. Users can specify a group of background genomes.

::DEVELOPER

Dr. Chaochun Wei

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Bowtie
  • CUDA driver

:: DOWNLOAD

GLAPD

:: MORE INFORMATION

SHRiMP 2.2.3 – Align Genomic Reads against Target genome

SHRiMP 2.2.3

:: DESCRIPTION

SHRiMP (SHort Read Mapping Package) is a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem’s colourspace genomic representation.

::DEVELOPER

 the Computational Biology Lab at the University of Toronto’sDepartment of Computer Science

:: SCREENSHOTS

Command

:: REQUIREMENTS

  • Linux  / MacOsX

:: DOWNLOAD

 SHRiMP

:: MORE INFORMATION

Citation:

Matei David1, Misko Dzamba, Dan Lister, Lucian Ilie and Michael Brudno
SHRiMP2: Sensitive yet Practical Short Read Mapping
Bioinformatics (2011) 27 (7): 1011-1012.