:: DESCRIPTION
TAP serves to validate the local torsion angles of a protein structure. The server computes both an overall conformational score of a protein structure and a confidence estimate.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Silvio C.E. Tosatto and Roberto Battistutta.
TAP score: torsion angle propensity normalization applied to local protein structure evaluation.
BMC Bioinformatics, accepted for publication. (2007)
:: DESCRIPTION
The MHCBN is a curated database consisting of detailed information about Major Histocompatibility Complex (MHC) Binding,Non-binding peptides and T-cell epitopes.The version 4.0 of database provides information about peptides interacting with TAP and MHC linked autoimmune diseases.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes.
Lata S, Bhasin M, Raghava GP.
BMC Res Notes. 2009 Apr 20;2:61. doi: 10.1186/1756-0500-2-61.
:: DESCRIPTION
TAPPred is an on-line service for predicting binding affinity of peptides toward the TAP transporter. The Prediction is based on cascade SVM, using sequence and properties of the the amino acids
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
Bhasin,M. and Raghava, G.P.S. (2004)
Analysis and prediction of affinity of TAP binding peptides using cascade SVM.
Protein Sci.,13 (3),596-607.
:: DESCRIPTION
TAP calculates the TAP and TAP-k to evaluate bioinformatics retrieval methods.
::DEVELOPER
Statistical Computational Biology Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
H.D. Carroll, M.G. Kann, S.L. Sheetlin, and J.L. Spouge
“Threshold Average Precision (TAP-k): a Measure of Retrieval Efficacy Designed for Bioinformatics”
(2010) Bioinformatics 26 : 1708-1713