ComplexTR 1.2.0 – Discovery of Tandem Repeats having Simple and Complex Pattern Structures

ComplexTR 1.2.0

:: DESCRIPTION

ComplexTR is a software to identify and characterize tandem repeats having simple and complex pattern structures including but not limited to

Simple sequence repeats (SSRs)
Variable length tandem repeats (VLTR)
Multi-periodic tandem repeats (MPTR)

::DEVELOPER

Amy M. Hauth

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Perl
C++ Compiler

:: DOWNLOAD

ComplexTR

:: MORE INFORMATION

Citation

Bioinformatics. 2002;18 Suppl 1:S31-7.
Beyond tandem repeats: complex pattern structures and distant regions of similarity.
Hauth AM, Joseph DA.

PPR v1 – Predict Tandem Repeat Sequence Length Variations

PPR v1

:: DESCRIPTION

PPR are models to predict repeat (in)variability

::DEVELOPER

Colm O’Dushlaine

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux /Windows
Perl

:: DOWNLOAD

PPR

:: MORE INFORMATION

TRAP 1.1 – Tandem Repeats Analysis Program

TRAP 1.1

:: DESCRIPTION

TRAP is a Perl program that provides a unified set of analyses for the selection, classification, quantification and automated annotation of tandemly repeated sequences.

::DEVELOPER

TRAP team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Perl

:: DOWNLOAD

TRAP

:: MORE INFORMATION

Citation:

Sobreira, T.J.; Durham, A.M. & Gruber, A. (2006).
TRAP: automated classification, quantification and annotation of tandemly repeated sequences.
Bioinformatics 22(3): 361-362.