Specialize 1.0 – Identification of Peptides with complex PTM from Tandem Mass Spectra

Specialize 1.0

:: DESCRIPTION

Specialize is a novel approach to enable the expedited development of new algorithms for any types of PTM (post-translational modifications) peptide fragmentation.

::DEVELOPER

CCMS The Center for Computational Mass Spectrometry

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux/ Windows/ MacOsX
Java

:: DOWNLOAD

Specialize

:: MORE INFORMATION

Citation

A Turn-key Approach for Large-scale Identification of Complex Post-translational Modifications
Wang J, Anania VG, Knott J, Rush J, Lill JR, Bourne PE, Bandeira N. J
Proteome Res. 2014 Mar 7;13(3):1190-9. doi: 10.1021/pr400368u. Epub 2014 Jan 29.

Percolator 2.04 – Confident Peptide Identifications from a collection of Tandem Mass Spectra

Percolator 2.04

:: DESCRIPTION

Percolator post-processes the results of a shotgun proteomics database search program, re-ranking peptide-spectrum matches so that the top of the list is enriched for correct matches.

::DEVELOPER

Noble Research Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux / Windows /MacOsX

:: DOWNLOAD

Percolator

:: MORE INFORMATION

Citation

Semi-supervised learning for peptide identification from shotgun proteomics datasets
Lukas Kall, Jesse D. Canterbury, Jason Weston, William Stafford Noble and Michael J. MacCoss
Nature Methods 4:923 – 925, November 2007