T-REKS – Identification of Tandem Repeats

T-REKS

:: DESCRIPTION

T-REKS (Tandem Repeats Exploration based on K-means in Sequences) is an algorithm for de novo detection and alignment of repeats in sequences based on K-means algorithm. Minimal length of repeat arrays is 9 for true homorepeats and 14 for other repeats with potential biological meaning.

::DEVELOPER

BiSMM – Structural Bioinformatics and Molecular Modeling

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java

:: DOWNLOAD

 T-REKS 

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Oct 15;25(20):2632-8. Epub 2009 Aug 11.
T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm.
Jorda J, Kajava AV.