:: DESCRIPTION
Protein Synthesis Race! is a game of racing to build a protein in this fun game about protein synthesis. Learn about transcription and translation as you build a protein the same way that a real cell does!
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
:: DESCRIPTION
MoSeC (Model to Sequence Converter) is a Java application for synthetic biology design that takes a model annotated with the DNA sequence information of genetic elements and converts it into a DNA sequence.
::DEVELOPER
Interdisciplinary Computing and Complex BioSystems (ICOS) research group
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2011 Apr 1;27(7):973-9. doi: 10.1093/bioinformatics/btr048. Epub 2011 Feb 4.
Model annotation for synthetic biology: automating model to nucleotide sequence conversion.
Misirli G, Hallinan JS, Yu T, Lawson JR, Wimalaratne SM, Cooling MT, Wipat A.
:: DESCRIPTION
BioPartsDB is an open-source, modular tool for DNA synthesis workflow and parts registration, ready to be used in most scenarios, such as molecular biology laboratories or iGem teams.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BioPartsDB: a synthetic biology workflow web-application for education and research.
Stracquadanio G, Yang K, Boeke JD, Bader JS.
Bioinformatics. 2016 Jul 13. pii: btw394.
:: DESCRIPTION
NET-SYNTHESIS performs combined synthesis, inference and simplification of signal transduction networks. The main idea of the application lies in representing observed indirect causal relationships as network paths, introducing pseudo-vertices for unknown intermediaries of these paths and using techniques from combinatorial optimization to find the most parsimonious graph consistent with all experimental observations. The software contains algorithms for (i) transitive reduction of an initially synthesized graph subject to the constraints that no edges corresponding to direct interactions are eliminated and (ii) pseudo-vertex collapse subject to the constraints that real (known) vertices are not eliminated.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Sema Kachalo, Ranran Zhang, Eduardo Sontag, Réka Albert and Bhaskar DasGupta,
NET-SYNTHESIS: A software for synthesis, inference and simplification of signal transduction networks,
Bioinformatics, Volume 24, Number 2, pp. 293-295, January 2008