r2cat
:: DESCRIPTION
r2cat (related reference based contig arrangement tool) can be used to order a set of contigs with respect to a single reference genome. This is done by mapping the contigs onto the reference using a q-gram filter. The mapping is visualized in a synteny plot.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Linux / Mac / Windows
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
Husemann, P. & Stoye, J.
r2cat: synteny plots and comparative assembly
Bioinformatics, 2010, Vol. 26(4), pp. 570-571