SWAP454 is a program for calling SNPs using 454 read data. SWAP454 also includes code for creating improved quality scores for 454 read data that has been incorporated into the algorithm used by 454 Life Sciences.
Computational R&D, The Broad Institute, Cambridge, MA
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Brockman W, Alvarez P, Young S, Garber M, Giannoukos G, Lee WL, Russ C, Lander ES, Nusbaum C, Jaffe DB. 2008.
Quality scores and SNP detection in sequencing-by-synthesis systems.
Genome Research 18: 763–770.