Atlas 2005 – Whole Genome Assembly Suite

Atlas 2005

:: DESCRIPTION

Atlas is a collection of software tools to facilitate the assembly of large genomes from whole genome shotgun reads, or a combination of whole genome shotgun reads and BAC or other localized reads.

::DEVELOPER

Human Genome Sequencing Center, Baylor College of Medicine

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  Atlas

:: MORE INFORMATION

BioWord 20120923 – Sequence Manipulation Suite for Microsoft Word

BioWord 20120923

:: DESCRIPTION

BioWord is a powerful biological sequence editor operating in the most convenient of places: inside your usual word-processor (Microsoft Word 2007 and 2010). Easy to install and embedded into a Microsoft Office Ribbon, BioWord allows instant access to most sequence manipulation and editing needs, such as reverse-complementing, translating or FASTA formatting, and features a full suite of sequence search methods, pair-wise alignment and motif discovery.

::DEVELOPER

the Erill Lab

:: SCREENSHOTS

bioword

:: REQUIREMENTS

  • Windows / MacOsX
  • MS WOrd 

:: DOWNLOAD

BioWord

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Jun 7;13:124. doi: 10.1186/1471-2105-13-124.
BioWord: a sequence manipulation suite for Microsoft Word.
Anzaldi LJ, Muñoz-Fernández D, Erill I.

Atlas2 1.4.3 / Atlas2Cloud 0.5 – Genome Analysis Suite

Atlas2 1.4.3 / Atlas2Cloud 0.5

:: DESCRIPTION

Atlas2 is a next-generation sequencing suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequencing (WECS) data.

Atlas2 Cloud is a framework for personal genome analysis in the cloud.

::DEVELOPER

Human Genome Sequencing Center, Baylor College of Medicine

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Atlas2 / Atlas2Cloud

:: MORE INFORMATION

Citation

Atlas2 Cloud: a framework for personal genome analysis in the cloud.
Evani US, Challis D, Yu J, Jackson AR, Paithankar S, Bainbridge MN, Jakkamsetti A, Pham P, Coarfa C, Milosavljevic A, Yu F.
BMC Genomics. 2012;13 Suppl 6:S19. doi: 10.1186/1471-2164-13-S6-S19. Epub 2012 Oct 26.

GrailEXP 6.2 – Grail Experimental Gene Discovery Suite

GrailEXP 6.2

:: DESCRIPTION

GrailEXP is a software package that predicts exons, genes, promoters, polyas, CpG islands, EST similarities, and repetitive elements within DNA sequence.

::DEVELOPER

GrailEXP Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 GrailEXP

:: MORE INFORMATION

Citation

Improved Analysis and Annotation Tools for Whole-Genome Computational Annotation and Analysis: GRAIL-EXP Genome Analysis Toolkit and Related Analysis Tools,
D. Hyatt, J. Snoddy, D. Schmoyer, G. Chen, K. Fischer, M. Parang, I. Vokler, S. Petrov, P. Locascio, V. Olman, Miriam Land, M. Shah, and E. Uberbacher,
Genome Sequencing & Biology Meeting, May 2000

BioSLAX 7.5 – BioInformatics LiveCD Suite

BioSLAX 7.5

:: DESCRIPTION

BioSLAX is a new live CD/DVD suite of bioinformatics tools that has been released by the resource team of the BioInformatics Center (BIC), National University of Singapore (NUS). Bootable from any PC, this CD/DVD runs the compressed SLACKWARE flavour of the LINUX operating system also known as SLAX.

::DEVELOPER

the BioInformatics Center (BIC), National University of Singapore

:: SCREENSHOTS

:: REQUIREMENTS

  • bootable CD-ROM drive

:: DOWNLOAD

 BioSLAX

:: MORE INFORMATION

SMS 2 – Sequence Manipulation Suite

SMS 2

:: DESCRIPTION

SMS (Sequence Manipulation Suite) is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching, and for program and algorithm testing.

::DEVELOPER

Stothard Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Internet Browser
  • java

:: DOWNLOAD

SMS

:: MORE INFORMATION

Citation

Stothard P (2000)
The Sequence Manipulation Suite: JavaScript programs for analyzing and formatting protein and DNA sequences.
Biotechniques 28:1102-1104.