ComplexCorr – Predict the Connectivity of Subunits within large Protein Complexes

ComplexCorr

:: DESCRIPTION

With ComplexCorr you can predict the connectivity of subunits within large protein complexes.

::DEVELOPER

ComplexCorr team

:: SCREENSHOTS

N/a

:: REQUIREMENTS

Web browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

J Mol Biol. 2010 Nov 19;404(1):158-71. doi: 10.1016/j.jmb.2010.09.029. Epub 2010 Sep 22.
Coevolution predicts direct interactions between mtDNA-encoded and nDNA-encoded subunits of oxidative phosphorylation complex i.
Gershoni M1, Fuchs A, Shani N, Fridman Y, Corral-Debrinski M, Aharoni A, Frishman D, Mishmar D.

GprotPRED – Detection of distinct Galpha families, Gbeta and Ggamma subunits of heterotrimeric G-proteins

GprotPRED

:: DESCRIPTION

GprotPRED is an online tool that uses profile Hidden Markov Models (pHMMs) for the four known heterotrimeric Galpha protein families, the Gbeta and the Ggamma subunit in order to classify a set of protein sequences into the appropriate G-protein family.

::DEVELOPER

The Biophysics and Bioinformatics Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Perl

:: DOWNLOAD

GprotPRED

:: MORE INFORMATION

Citation

Biochim Biophys Acta. 2016 May;1864(5):435-40. doi: 10.1016/j.bbapap.2016.02.005. Epub 2016 Feb 5.
GprotPRED: Annotation of Gα, Gβ and Gγ subunits of G-proteins using profile Hidden Markov Models (pHMMs) and application to proteomes.
Kostiou VD, Theodoropoulou MC, Hamodrakas SJ.