SubNet 2.0 – Subnetwork Extraction

SubNet 2.0

:: DESCRIPTION

SubNet is a Java-based stand-alone program for extracting subnetworks, given a basal network and a set of selected nodes.

::DEVELOPER

ZDZ lab

:: SCREENSHOTS

SubNet

:: REQUIREMENTS

  • Linux /Windows / MacOsX
  • Java

:: DOWNLOAD

 SubNet

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Oct 1;29(19):2509-11. doi: 10.1093/bioinformatics/btt430. Epub 2013 Aug 13.
SubNet: a Java application for subnetwork extraction.
Lemetre C1, Zhang Q1, Zhang ZD.

OptDis – Optimally Discriminative Subnetwork Biomarkers

OptDis

:: DESCRIPTION

OptDis is a novel network-based classification algorithm using color coding technique to identify optimally discriminative subnetwork markers.

::DEVELOPER

Phuong Dao

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 OptDis

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Jul 1;27(13):i205-13. doi: 10.1093/bioinformatics/btr245.
Optimally discriminative subnetwork markers predict response to chemotherapy.
Dao P1, Wang K, Collins C, Ester M, Lapuk A, Sahinalp SC.