CHRONOS 1.22.0 – microRNA-mediated sub-pathway Enrichment Analysis

CHRONOS 1.22.0

:: DESCRIPTION

CHRONOS (time-vaRying enriCHment integrOmics Subpathway aNalysis tOol) is an R package by integrating time-series mRNA/microRNA expression data with KEGG pathway maps and microRNA-target interactions.

::DEVELOPER

the Biosignal Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R

:: DOWNLOAD

 CHRONOS

:: MORE INFORMATION

Citation

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis.
Vrahatis AG, Dimitrakopoulou K, Balomenos P, Tsakalidis AK, Bezerianos A.
Bioinformatics. 2015 Nov 14. pii: btv673

SPECifIC – Sub-Pathway Extractor and Enricher

SPECifIC

:: DESCRIPTION

SPECifIC is a network-based systems biology tool capable of extracting disease-perturbed subpathways within pathway networks in connection with expression data.

::DEVELOPER

SPECifIC team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / web server

:: DOWNLOAD

SPECifIC

:: MORE INFORMATION

Citation:

Detecting Disease Specific Pathway Substructures through an Integrated Systems Biology Approach.
Alaimo S, Marceca GP, Ferro A, Pulvirenti A.
Noncoding RNA. 2017 Apr 19;3(2). pii: E20. doi: 10.3390/ncrna3020020.