Tag: Structure Modeling

CirPred – Structure Modeling and Linker Design system for circularly Permuted Proteins

CirPred

:: DESCRIPTION

CirPred is the first structure modelling and linker design system for a powerful protein engineering technique known as circular permutation (CP), which can be visualized as if the native termini of a protein were linked and new ones created elsewhere.

::DEVELOPER

the 10Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

NO

:: MORE INFORMATION

Citation

Chen TR, Lin YC, Huang YW, Chen CC, Lo WC.
CirPred, the first structure modeling and linker design system for circularly permuted proteins.
BMC Bioinformatics. 2021 Oct 12;22(Suppl 10):494. doi: 10.1186/s12859-021-04403-1. PMID: 34641789; PMCID: PMC8513176.

RNAComposer 1.0 – RNA Structure Modeling Server

RNAComposer 1.0

:: DESCRIPTION

The RNAComposer system offers a new user-friendly approach to the fully automated prediction of large RNA 3D structures. The method is based on the machine translation principle and operates on the RNA FRABASE database acting as the dictionary relating RNA secondary structure and tertiary structure elements.

::DEVELOPER

The Bioinformatics Group, Poznan University of Technology.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Aug;40(14):e112. doi: 10.1093/nar/gks339. Epub 2012 Apr 26.
Automated 3D structure composition for large RNAs.
Popenda M1, Szachniuk M, Antczak M, Purzycka KJ, Lukasiak P, Bartol N, Blazewicz J, Adamiak RW.