Tag: Strength

iEnhancer-EL / iEnhancer-2L – Identifying Enhancers and their Strength

iEnhancer-EL / iEnhancer-2L

:: DESCRIPTION

iEnhancer-EL is a web server of Identifying enhancers and their strength with ensemble learning approach.

iEnhancer-2L is a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition

::DEVELOPER

Liu Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Liu B, Li K, Huang DS, Chou KC.
iEnhancer-EL: identifying enhancers and their strength with ensemble learning approach.
Bioinformatics. 2018 Nov 15;34(22):3835-3842. doi: 10.1093/bioinformatics/bty458. PMID: 29878118.

Liu B, Fang L, Long R, Lan X, Chou KC.
iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition.
Bioinformatics. 2016 Feb 1;32(3):362-9. doi: 10.1093/bioinformatics/btv604. Epub 2015 Oct 17. PMID: 26476782.

miRmap 1.1 / miRmap web – Comprehensive Prediction of microRNA Target Repression Strength

miRmap 1.1 / miRmap web

:: DESCRIPTION

The miRmap library is a Python library predicting the repression strength of microRNA (miRNA) targets.

miRmap web application offers a user-friendly and feature-rich resource for browsing precomputed miRNA target predictions for model organisms, as well as for predicting and ranking targets for user-submitted sequences.

::DEVELOPER

Prof Zdobnov Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 miRmap

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2012 Dec;40(22):11673-83. doi: 10.1093/nar/gks901. Epub 2012 Oct 2.
MiRmap: comprehensive prediction of microRNA target repression strength.
Vejnar CE1, Zdobnov EM.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W165-8. doi: 10.1093/nar/gkt430. Epub 2013 May 28.
miRmap web: Comprehensive microRNA target prediction online.
Vejnar CE1, Blum M, Zdobnov EM.