CSS-Palm 4.0 – Palmitoylation Site Prediction with a Clustering and Scoring Strategy

CSS-Palm 4.0

:: DESCRIPTION

CSS-Palm is a computer program for palmitoylation site prediction, Clustering and Scoring Strategy for Palmitoylation Sites Prediction.The program’s prediction performance is encouraging with highly positive Jack-Knife validation results (sensitivity 82.16% and specificity 83.17% for cut-off score 2.6).

::DEVELOPER

The CUCKOO Workgroup

:: SCREENSHOTS

:: REQUIREMENTS

WIndows / Linux / MacOsX
Java

:: DOWNLOAD

CSS-Palm

:: MORE INFORMATION

Citation

CSS-Palm 2.0: an updated software for palmitoylation sites prediction
Jian Ren, Longping Wen, Xinjiao Gao, Changjiang Jin, Yu Xue and Xuebiao Yao.
Protein Engineering, Design and Selection.2008 21(11):639-644

ADEPT v1.0 – Domain Independent Sequence Alignment strategy for GPU architectures

ADEPT v1.0

:: DESCRIPTION

ADEPT is a GPU accelerated sequence alignment library for short DNA reads and protein sequences.

::DEVELOPER

Muaaz Gul Awan

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

ADEPT

:: MORE INFORMATION

Citation

Awan MG, Deslippe J, Buluc A, Selvitopi O, Hofmeyr S, Oliker L, Yelick K.
ADEPT: a domain independent sequence alignment strategy for gpu architectures.
BMC Bioinformatics. 2020 Sep 15;21(1):406. doi: 10.1186/s12859-020-03720-1. PMID: 32933482; PMCID: PMC7493400.

Immune Defense – Biochemistry Strategy Game

Immune Defense

:: DESCRIPTION

Immune Defense is a Real Time Strategy (RTS) game. The player deploys 7 types of white blood cells against bacteria, parasites, viruses and even cancer… Our goal is to teach the basics of cell biology and biochemistry in an intuitive way. To beat Immune Defense, the player needs to know what proteins do, what receptors do, how cells respond to signals in the environment, how random events lead to predictable behaviors … Additionally, the player battles HIV, TB, Listeria, a Malaria-like organism and learns exactly how vaccination is helpful, why viruses are difficult to detect and why TB and AIDS are so difficult to overcome.

::DEVELOPER

Molecular Jig Games

:: SCREENSHOTS

:: REQUIREMENTS

Web Browser
Unity

:: DOWNLOAD

Immune Defense

:: MORE INFORMATION

DAS tool 1.1.3 – Recovery of Genomes from Metagenomes via Dereplication, Aggregation, and Scoring Strategy

DAS tool 1.1.3

:: DESCRIPTION

DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.

::DEVELOPER

Banfield Lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

Linux
R

:: DOWNLOAD

DAS Tool

:: MORE INFORMATION

Citation

Sieber CMK, Probst AJ, Sharrar A, Thomas BC, Hess M, Tringe SG, Banfield JF.
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.
Nat Microbiol. 2018 Jul;3(7):836-843. doi: 10.1038/s41564-018-0171-1. Epub 2018 May 28. PMID: 29807988; PMCID: PMC6786971.