STRAP 1.5 – Software Tool for Rapid Annotation of Proteins

STRAP 1.5

:: DESCRIPTION

STRAP, the Software Tool for Rapid Annotation of Proteins, saves you time by automatically annotating a protein list with information that helps you meaningfully interpret your mass spectrometry data.

::DEVELOPER

Cardiovascular Proteomics Center ，BU School of Medicine

:: SCREENSHOTS

:: REQUIREMENTS

Windows

:: DOWNLOAD

STRAP

:: MORE INFORMATION

Citation

Bhatia VN, Perlman DH, Costello CE, McComb ME.
Software tool for researching annotations of proteins: open-source protein annotation software with data visualization.
Analytical Chemistry 2009, 81 (23), 9819-23.

STRAP 20200621 – STRucture-based Sequence Alignment Program

STRAP 20200621

:: DESCRIPTION

Strap (STRucture-based Sequence Alignment Program) aligns proteins by sequence and 3D-structure.Strap supports the simultaneous analysis of hundreds of proteins and integrates amino acid sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence and residue annotation.

::DEVELOPER

Christoph Gille

:: SCREENSHOTS

:: REQUIREMENTS

Linux / MacOsX / Windows
Java

:: DOWNLOAD

STRAP

:: MORE INFORMATION

Citation

HotSwap for bioinformatics: a STRAP tutorial.
Gille C, Robinson PN.
BMC Bioinformatics. 2006 Feb 9;7:64.

RAxML-Light 1.09 – Strapped down Checkpointable RAxML version for Computing Huge trees

RAxML-Light 1.09

:: DESCRIPTION

RAxML-Light is a strapped down RAxML version for conducting tree searches on very large trees under the CAT approximation and GAMMA model of rate heterogeneity.

::DEVELOPER

the Exelixis Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

:: DOWNLOAD

RAxML-Light

:: MORE INFORMATION

Citation

Bioinformatics (2012) 28 (15):2064-2066.
RAxML-Light: A Tool for computing TeraByte Phylogenies.
Stamatakis A, Aberer AJ, Goll C, Smith SA, Berger SA, Izquierdo-Carrasco F.