:: DESCRIPTION
CRISPRDirection is an algorithm that accurately predicts the strand of the resulting crRNAs.
::DEVELOPER
Dr Chris Brown’s Research Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs.
Biswas A, Fineran PC, Brown CM.
Bioinformatics. 2014 Jul 1;30(13):1805-13. doi: 10.1093/bioinformatics/btu114.
:: DESCRIPTION
RNASeqBrowser is a visualization tool that incorporates and extends the functionality of the UCSC genome browser. For example, RNASeqBrowser simultaneously displays read coverage, SNPs, InDels and raw read tracks with other BED and wiggle tracks — all being dynamically built from the BAM file.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
STAN implements bidirectional Hidden Markov Models (bdHMM), which are designed for studying directed genomic processes, such as gene transcription, DNA replication, recombination or DNA repair by integrating genomic data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle.
Zacher B, Lidschreiber M, Cramer P, Gagneur J, Tresch A.
Mol Syst Biol. 2014 Dec 19;10:768. doi: 10.15252/msb.20145654.
:: DESCRIPTION
changePedStrand is a sfotware which Changes Strand (by base pairing) for a Pedigree file.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: MORE INFORMATION
