Tag: Statistical Test

HKA 20100709 – Statistical Test for Natural Selection

HKA 20100709

:: DESCRIPTION

HKA is a computer program that carries out the widely used statistical test for natural selection.This program can handle very large numbers of loci and sample sizes, and conducts tests via coalescent simulation as well as by the conventional chi square approximation.   The simulations can also be used to conduct other tests of natural selection, including tests of Tajima’s D statistic (1989) and the D statistic of Fu and Li (1993).

::DEVELOPER

the Hey lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOsX

:: DOWNLOAD

  HKA

:: MORE INFORMATION

rankSynergy – Rank-based Statistical Test for measuring Synergistic Effects between two Gene Sets

rankSynergy

:: DESCRIPTION

The rankSynergy performs a rank-based non-parametric statistical test for measuring the synergistic effects between two gene sets. For calculating an approximate significance value of synergy, an efficient Markov chain Monte Carlo method is used

::DEVELOPER

Yuichi Shiraishi (friend1ws@gmail.com)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

  rankSynergy

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Sep 1;27(17):2399-405. doi: 10.1093/bioinformatics/btr382.
A rank-based statistical test for measuring synergistic effects between two gene sets.
Shiraishi Y, Okada-Hatakeyama M, Miyano S.