Tag: Stability Selection

TIGRESS 2.1 – Trustful Inference of Gene REgulation using Stability Selection

TIGRESS 2.1

:: DESCRIPTION

TIGRESS is a free MATLAB implementation of a method to infer regulatory networks from gene expression data.

::DEVELOPER

Centre for Computational Biology

:: SCREENSHOTS

 N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • MatLab

:: DOWNLOAD

 TIGRESS

 :: MORE INFORMATION

Citation

BMC Syst Biol. 2012 Nov 22;6:145. doi: 10.1186/1752-0509-6-145.
TIGRESS: Trustful Inference of Gene REgulation using Stability Selection.
Haury AC, Mordelet F, Vera-Licona P, Vert JP.

stabs 0.6-4 – Stability Selection with Error Control

stabs 0.6-4

:: DESCRIPTION

stabs is an R package for Stability selection.Resampling procedures to assess the stability of selected variables with additional finite sample error control for high-dimensional variable selection procedures such as Lasso or boosting

::DEVELOPER

Dr. Benjamin Hofner

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • R

:: DOWNLOAD

  stabs

:: MORE INFORMATION

Citation

Controlling false discoveries in high-dimensional situations: boosting with stability selection.
Hofner B, Boccuto L, Göker M.
BMC Bioinformatics. 2015 May 6;16(1):144.