SAPS/SSPA 20110801 – Statistical Analysis of Protein Sequences & Significant Segment Pair Alignment

SAPS/SSPA 20110801

:: DESCRIPTION

SAPS (statistical analysis of protein sequences) calculates all the statistics for any individual protein sequence input.

SSPA is an acronym for Significant Segment Pair Alignment.

::DEVELOPER

The Brendel Group @ Indiana University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

SAPS/SSPA

:: MORE INFORMATION

Citation

SAPS
Brendel, V., Bucher, P., Nourbakhsh, I.R., Blaisdell, B.E. & Karlin, S. (1992)
Methods and algorithms for statistical analysis of protein sequences.
Proc. Natl. Acad. Sci. USA 89, 2002-2006.

SSPA
Karlin, S., Weinstock, G. & Brendel, V. (1995)
Bacterial classifications derived from RecA protein sequence comparisons.
J. Bacteriol. 177, 6881-6893.

SSPA 2.32.1 – Power and Sample Size analysis for Microarray Experiments on the basis of Pilot data

SSPA 2.32.1

:: DESCRIPTION

SSPA : General Sample size and power analysis for microarray and next-generation sequencing data.

::DEVELOPER

Maarten van Iterson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R
  • BioConductor

:: DOWNLOAD

 SSPA

:: MORE INFORMATION

Citation

BMC Genomics. 2009 Sep 17;10:439. doi: 10.1186/1471-2164-10-439.
Relative power and sample size analysis on gene expression profiling data.
van Iterson M1, ‘t Hoen PA, Pedotti P, Hooiveld GJ, den Dunnen JT, van Ommen GJ, Boer JM, Menezes RX.