rNAV 2.0

:: DESCRIPTION

rNAV (for rna NAVigator), is a major evolution of rNAV, a tool for the visual exploration and analysis of bacterial sRNA-mediated regulatory networks. rNAV has been designed to help bioinformaticians and biologists to identify, from lists of thousands of predictions, pertinent and reasonable sRNA target candidates for carrying out experimental validations.

::DEVELOPER

Romain Bourqui

:: SCREENSHOTS

:: REQUIREMENTS

Linux/Windows
Tulip

:: DOWNLOAD

rNAV

:: MORE INFORMATION

Citation

Bourqui R, Dutour I, Dubois J, Benchimol W, Thébault P.
rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining.
BMC Bioinformatics. 2017 Mar 23;18(1):188. doi: 10.1186/s12859-017-1598-8. PMID: 28335718; PMCID: PMC5364647.

CopraRNA 2.1.3

:: DESCRIPTION

CopraRNA (Comparative Prediction Algorithm for sRNA Targets) is a tool for sRNA target prediction. It computes whole genome predictions by combination of distinct whole genome IntaRNA predictions. As input, CopraRNA requires at least 3 homologous sRNA sequences from 3 distinct organisms in FASTA format.

::DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux

Perl

:: DOWNLOAD

:: MORE INFORMATION

Citation

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):E3487-96. doi: 10.1073/pnas.1303248110. Epub 2013 Aug 26.
Comparative genomics boosts target prediction for bacterial small RNAs.
Wright PR1, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J.

Tag: sRNA

rNAV 2.0 – Visual Exploration of sRNA mediated Regulatory Network

rNAV 2.0

CopraRNA 2.1.3 – sRNA Target Prediction utilizing Homology

CopraRNA 2.1.3