Tag: SRM

SRM Collider 1.4.2 – Computes Interferences in SRM (Selected Reaction Monitoring) Experiments

SRM Collider 1.4.2

:: DESCRIPTION

The SRMCollider is a program that will take your input transitions and compare them to all other transitions in a given background proteome and find interferences.

::DEVELOPER

Röst Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows /MacOsX
  • Python
  • C++ Compiler
:: DOWNLOAD

 SRM Collider

:: MORE INFORMATION

Citation

Mol Cell Proteomics. 2012 Aug;11(8):540-9. doi: 10.1074/mcp.M111.013045. Epub 2012 Apr 24.
A computational tool to detect and avoid redundancy in selected reaction monitoring.
Röst H1, Malmström L, Aebersold R.

MRMPlusGUI 20151104 – Quality Control and Assessment tool for SRM/MRM Assay development

MRMPlusGUI 20151104

:: DESCRIPTION

MRMPlusGUI is a freely available, open-source tool in the platform independent Java programming language to compute analytical measures as recommended recently by the Clinical Proteomics Tumor Analysis Consortium Assay Development Working Group for “Tier 2” assays.

::DEVELOPER

MRMPlusGUI team

:: SCREENSHOTS

MRMPlus

:: REQUIREMENTS

  • MacOsX/Linux / Windows
  • Java

:: DOWNLOAD

 MRMPlusGUI

:: MORE INFORMATION

Citation

MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development.
Aiyetan P, Thomas SN, Zhang Z, Zhang H.
BMC Bioinformatics. 2015 Dec 12;16(1):411. doi: 10.1186/s12859-015-0838-z.