Auto-qPCR – Process Spreadsheet output directly from qPCR Thermocycler

Auto-qPCR

:: DESCRIPTION

Auto-qPCR is a python based web app designed to process raw data files from thermal cycler machines.

::DEVELOPER

Auto-qPCR team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

Auto-qPCR

:: MORE INFORMATION

Citation

Maussion G, Thomas RA, Demirova I, Gu G, Cai E, Chen CX, Abdian N, Strauss TJP, Kelaï S, Nauleau-Javaudin A, Beitel LK, Ramoz N, Gorwood P, Durcan TM.
Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data.
Sci Rep. 2021 Oct 29;11(1):21293. doi: 10.1038/s41598-021-99727-6. PMID: 34716395; PMCID: PMC8556264.

SDRF2GRAPH 1.0 – Visualization Tool of a Spreadsheet-based Description of Experimental Processes

SDRF2GRAPH 1.0

:: DESCRIPTION

SDRF2GRAPH is an application to produce graphical image of investigation design graph (IDG) based on SDRFs written in a MAGE-tab formatted spreadsheet(*.xlsx).

::DEVELOPER

FANTOM

:: SCREENSHOTS

N/A

: REQUIREMENTS

  • Linux
  • Ruby, rexml, rubyzip, GraphViz

:: DOWNLOAD

 SDRF2GRAPH

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2009 May 7;10:133. doi: 10.1186/1471-2105-10-133.
SDRF2GRAPH: a visualization tool of a spreadsheet-based description of experimental processes.
Kawaji H1, Hayashizaki Y, Daub CO.