Tag: Split read

DELLY 0.8.7 – integrated Split-read and Paired-end based Structural Variant Discovery in Deep sequencing data

DELLY 0.8.7

:: DESCRIPTION

DELLY is an integrated structural variant prediction method that can detect deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends and split-reads to sensitively and accurately delineate genomic rearrangements throughout the genome.

::DEVELOPER

Korbel Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 DELLY

:: MORE INFORMATION

Citation

DELLY: structural variant discovery by integrated paired-end and split-read analysis
Tobias Rausch; Thomas Zichner; Andreas Schlattl; Adrian M. Stütz; Vladimir Benes; Jan O. Korbel
Bioinformatics 2012 28: i333-i339

SPLITREAD 0.1 – Split read based INDEL/SV Caller

SPLITREAD 0.1

:: DESCRIPTION

SPLITREAD is a novel method for detecting INDELs (small insertions and deletion with size less than 50bp) as well as large deletions deletions that are within the coding regions from the exome sequencing data. It also can be applied to the whole genome sequencing data.

::DEVELOPER

Emre Karakoc

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Complier

:: DOWNLOAD

  SPLITREAD

:: MORE INFORMATION