Giotto 1.0.3 – Single-cell Spatial Analysis pipeline

Giotto 1.0.3

:: DESCRIPTION

Giotto is a comprehensive pipeline for spatial transcriptomic data analysis and visualization.

::DEVELOPER

Guo-CHeng Yuan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • R
  • ImageJ library (JAR file)

:: DOWNLOAD

Giotto

:: MORE INFORMATION

Citation

Giotto, a pipeline for integrative analysis and visualization of single-cell spatial transcriptomic data
Ruben Dries, Qian Zhu, Chee-Huat Linus Eng, Arpan Sarkar, Feng Bao, Rani E George, Nico Pierson, Long Cai, Guo-Cheng Yuan
doi: https://doi.org/10.1101/701680

SANTA 2.24.0 – Spatial ANalysis of NeTwork Associations

SANTA 2.24.0

:: DESCRIPTION

SANTA is a computational approach for linking networks of molecular interactions to cellular functions and phenotypes. SANTA functionally annotates networks like standard enrichment methods annotate lists of genes.

::DEVELOPER

the Markowetz lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • R
  • BioConductor

:: DOWNLOAD

 SANTA

:: MORE INFORMATION

Citation

SANTA: quantifying the functional content of molecular networks.
Cornish AJ, Markowetz F.
PLoS Comput Biol. 2014 Sep 11;10(9):e1003808. doi: 10.1371/journal.pcbi.1003808. eCollection