Spanner – Hybrid-template Structural Modeling

Spanner

:: DESCRIPTION

Spanner is a structural homology modeling program that threads a query amino-acid sequence onto a template protein structure. Spanner is unique in that it handles gaps by spanning the region of interest using fragments of known structures.

::DEVELOPER

Systems Immunology Laboratory , Osaka University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

No

:: MORE INFORMATION

Citation

Immunome Res. 2011 Apr 1;7(1):1-8.
Bridging the gap between single-template and fragment based protein structure modeling using Spanner.
Lis M, Kim T, Sarmiento JJ, Kuroda D, Dinh HV, Kinjo AR, Amada K, Devadas S, Nakamura H, Standley DM.

SPANNER 1.0.0 – Homology-based Taxonomic Classification of Protein Sequences

SPANNER 1.0.0

:: DESCRIPTION

SPANNER (Simularity Profile ANNotatER) extends LCA to perform supervised homology-based taxonomic classification of metagenomic fragments.

::DEVELOPER

Beiko lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /MacOsX
  • C++ Compiler
  • Python

:: DOWNLOAD

 SPANNER

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Aug 1;29(15):1858-64. doi: 10.1093/bioinformatics/btt313.
SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles.
Porter MS, Beiko RG.