SOMBRERO 1.1
:: DESCRIPTION
SOMBRERO (The Self-Organizing Map for Biological Regulatory Element Recognition and Ordering) is a motif-finder that is based on the Self-Organizing Map neural network algorithm. In contrast to other probabilistic motif discovery tools, SOMBRERO poses motif-finding as a clustering problem. As such, SOMBRERO simultaneously estimates all motif signals in the input sequences (regulatory signals are separated from others during post-processing), as opposed to estimating each significant signal one-by-one
:: DEVELOPER
Shaun Mahony , Pilib ó Broin (pilib.obroin-at-gmail.com)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/MacOsX/Windows
:: DOWNLOAD
:: MORE INFORMATION
Citation:
S Mahony, A Golden, TJ Smith, PV Benos
“Improved detection of DNA motifs using a self-organized clustering of familial binding profiles.” (2005)
Bioinformatics 21(Suppl 1):i283-i291