MolScat 0.8 – Evaluation of Solution Scattering of Biological Macromolecules from Atomic Coordinates

MolScat 0.8

:: DESCRIPTION

MolScat is a program to evaluate solution scattering of biological macromolecules from atomic coordinates.

::DEVELOPER

Hofmann Laboratory, Eskitis Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

MolScat

 :: MORE INFORMATION

Citation

Hofmann, A., Whitten, A. (2014)
Two practical Java software tools for small-angle X-ray scattering analysis of biomolecules.
J. Appl. Crystallogr. 47, 810-815.

CubeX – Calculation of Pairwise Linkage Disequilibrium using Exact Solution

CubeX

:: DESCRIPTION

CubeX calculates haplotype frequencies using the exact solution to the cubic equation rather than an iterative approach.

::DEVELOPER

Tom Gaunt’s group in the MRC IEU

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /Mac OsX / Windows
  • Python

:: DOWNLOAD

 CubeX

:: MORE INFORMATION

Citation:

Gaunt TR, Rodríguez S, Day IN.
Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool ‘CubeX’.
BMC Bioinformatics. 2007 Nov 2;8:428.

SOLVE / RESOLVE 2.13 – Automated Crystallographic Structure Solution for MIR, SAD, and MAD

SOLVE / RESOLVE 2.13

:: DESCRIPTION

SOLVE is a program that can carry out all the steps of macromolecular structure determination from scaling data to calculation of an electron density map, automatically.

RESOLVE is a program that improves electron density maps.

::DEVELOPER

Thomas C. Terwilliger

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Linux / Mac OsX

:: DOWNLOAD

 SOLVE / RESOLVE

:: MORE INFORMATION

Citation

SOLVE:
Terwilliger, T.C. and J. Berendzen. (1999)
“Automated MAD and MIR structure solution”.
Acta Crystallographica D55, 849-861.

RESOLVE:
Terwilliger, T. C. (2000)
“Maximum likelihood density modification,”
Acta Cryst. D56, 965-972.

Terwilliger, T. C. (2003)
“Automated main-chain model building by template matching and iterative fragment extension”
Acta Cryst. D59, 38-44.