SNPALYZE 8.0 – SNP and Disease Association Analysis Software

SNPALYZE 8.0

:: DESCRIPTION

SNPAlyze is able to import many specific types of Genotyping data files and analyze them.When case-control studies are analyzed, in addition to the columns with genotyping data, extra columns for cases and controls are necessary in order to distinguish the groups.

::DEVELOPER

Dynacom

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows
:: DOWNLOAD

  SNPALYZE

:: MORE INFORMATION

Citation

Shimo-Onoda, Tanaka, Furushima, Nakajima, Toh, Harata, Yone, Komiya, Adachi, Nakamura, Fujimiya, Inoue(2002),
Akaike’s information criterion for a measure of linkage disequilibrium“,
J Hum Genet, 47(12): 649-655

BioStat 5.3.0 – Biology Statistical Software

BioStat 5.3.0

:: DESCRIPTION

BioStat is a user-friendly biology and medicine oriented statistical software.With BioStat 2009, one gets a robust suite of statistics tools and graphical analysis methods that are easily accessed though a simple and straightforward interface.

::DEVELOPER

AnalystSoft Inc

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 BioStat

:: MORE INFORMATION

Buy

CP ATLAS 2.0 – Thin Layer and Gel Analysis Software

CP ATLAS 2.0

:: DESCRIPTION

CP ATLAS is a software to analyze TLC and gel images. With CP ATLAS you don’t need a professional densitometer for simple quantitative analysis. You can use a simple digital camera, office scanner or mobile phone to get a picture. With CP ATLAS the analysis takes only a few seconds, and you can copy the results to your spreadsheet software for further usage.

::DEVELOPER

lazarsoftware.com

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Mac OsX / Windows
  • Java

:: DOWNLOAD

CP ATLAS

:: MORE INFORMATION

Leaphy 1.0 beta – Phylogenetic Tree Estimation Software

Leaphy 1.0 beta

:: DESCRIPTION

Leaphy (Likelihood Estimation Algorithms in Phylogenetics) uses maximum likelihood (ML) to estimate trees from aligned amino acid and nucleotide sequences under a variety of commonly used and popular models.

::DEVELOPER

Simon Whelan

:: REQUIREMENTS

  • Windows / Linux / MacOSX

:: DOWNLOAD

Leaphy

:: MORE INFORMATION

Citation

S. Whelan.
New approaches to phylogenetic tree search and their application to large numbers of protein alignments.
Syst Biol (2007) 56 (5): 727-740. doi: 10.1080/10635150701611134

Vmatch – Large Scale Sequence Analysis Software

Vmatch

:: DESCRIPTION

Vmatch is a versatile software tool for efficiently solving large scale sequence matching tasks. Vmatch subsumes the software tool REPuter, but is much more general, with a very flexible user interface, and improved space and time requirements.

::DEVELOPER

Stefan Kurtz

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

Vmatch

:: MORE INFORMATION

If you need Vmatch for an additional platform, then please contact Stefan Kurtz. If you want to use Vmatch for academic research, educational and demonstration purposes you may obtain a free of charge non-commercial license as follows: download the license agreement form, read it, sign it, and fax it to the number given in the agreement. If you want to obtain a commercial license for Vmatch, then please directly contact Stefan Kurtz

Vised 1.1 – Sequence Editor / Display Software

Vised 1.1

:: DESCRIPTION

Vised (Visual Sequence Editor) is a small, simple, command prompt based tool designed to offer users a handy sequence editor / display software.

::DEVELOPER

Ken Peters  (kpeters@qb.island.net)

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Vised

:: MORE INFORMATION

NetPrimer – Free Primer Analysis Software

NetPrimer

:: DESCRIPTION

NetPrimer combines the latest primer design algorithms with a web-based interface allowing the user to analyze primers over the Internet. All primers are analyzed for melting temperature using the nearest neighbor thermodynamic theory to ensure accurate Tm prediction. Primers are analyzed for all secondary structures including hairpins, self-dimers, and cross-dimers in primer pairs. This ensures the availability of the primer for the reaction as well as minimizing the formation of primer dimer. The program eases quantitation of primers by calculating primer molecular weight and optical activity. To facilitate the selection of an optimal primer, each primer is given a rating based on the stability of its secondary structures. A comprehensive analysis report can be printed for individual primers or primer pairs.

::DEVELOPER

PREMIER Biosoft

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Java

:: DOWNLOAD

NetPrimer

:: MORE INFORMATION

ViewIt 4.23 – Multidimensional Image Processing Software

ViewIt 4.23

:: DESCRIPTION

ViewIt is basically multidimensional image processing software originally developed to handle data from magnetic resonance imaging. Some features of Viewit include:

Projection reconstruction algorithms for MRI data
Multidimensional Fourier transforms
Convolution operators for image smoothing and enhancement
Simple volume rendering functionality

::DEVELOPER

the Beckman Institute Imaging Technology Group

:: SCREENSHOTS

Command Lines

:: REQUIREMENTS

:: DOWNLOAD

ViewIt

:: MORE INFORMATION

Citation

“Viewit: A Software System for Multi-Dimensional Biomedical Image Processing, An alysis, and Visualization”
C.S. Potter and P.J. Moran,
SPIE Conference on Biomedical Image Processing III and T hree-Dimensional Microscopy, Vol 1660, February, 1992, pp. 767-773

RasTop 2.2 – Molecular Visualization Software Adapted for Rasmol

RasTop 2.2

:: DESCRIPTION

RasTop is a molecular visualization software adapted from the program RasMol, which was initially developed by Roger Sayle. RasTop is particularly adapted for educational purposes and for the rapid analysis of macromolecules at the bench.  RasTop wraps a user-friendly graphical interface around the “RasMol molecular engine”. There is no need to type on the command line; each command in the menu generates its own script. Through an extended menu and a command panel, users can manipulate numerous molecules rapidly and learn about them. Work sessions are saved in script format and are fully regenerated with a simple mouse click.

::DEVELOPER

Philippe Valadon

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows
  • Linux with Wine
  • Mac with Virtual PC

:: DOWNLOAD

RasTop 2.2Version Francaise

:: MORE INFORMATION

RasTop 2.2 is distributed both under the GPL license ad the Rasmol license.  Certain conditions apply to users and to developers to ensure that RasTop remain open source. Please, consult the license.txt and raslic.txt file in the package.

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