:: DESCRIPTION
Spinesis a C++ software package for genomic sequence alignment and analysis.
::DEVELOPER
The Broad Institute, Cambridge, MA
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Grabherr MG, Russell P, Meyer M, Mauceli E, Alfoldi J, Di Palma F, Lindblad-Toh K.
Genome-wide synteny through highly sensitive sequence alignment: Satsuma.
Bioinformatics. 2010 May 1;26(9):1145-51. Epub 2010 Mar 5
:: DESCRIPTION
Orange Bioinformatics is an add-on for Orange data mining software package. It extends Orange by providing common functionality for basic tasks in bioinformatics. It also provides widgets for Orange Canvas, which enable users who are not programmers to manage microarray and genomic data flow and to customize their analysis by combining common data analysis tools to fit their needs.
::DEVELOPER
BioLab , University of Ljubljana
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Tomaž Curk, Janez Demšar, Qikai Xu, Gregor Leban, Uroš Petrovič, Ivan Bratko, Gad Shaulsky, Blaž Zupan.
Microarray data mining with visual programming.
Bioinformatics. 2005 Feb 1;21(3):396-8.
:: DESCRIPTION
VisRD is a software package allowing graphical inspection of the phylogenetic content of a sequence alignment, that is primarily intended for detection of recombination and recombination breakpoints.
::DEVELOPER
The UEA Computational Biology Laboratory at the University of East Anglia (UEA)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
P. Lemey, M. Lott, D. P. Martin and V. Moulton,
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning,
BMC bioinformatics (2009), 126-144
:: DESCRIPTION
GENEPOP is a population genetics software package
::DEVELOPER
Michel Raymond (Raymond@isem.univ-montp2.fr) and Francois Rousset (Rousset@isem.univ-montp2.fr)
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Rousset, F., 2008.
Genepop’007: a complete reimplementation of the Genepop software for Windows and Linux.
Mol. Ecol. Resources 8: 103-106.
:: DESCRIPTION
Weka-CG is a comprehensive data mining software package for human genetics. It is an extension of the open-source, JAVA-based, Weka data mining package.
::DEVELOPER
the Computational Genetics Laboratory in the Institute for Quantitative Biomedical Sciences at Dartmouth Medical Schooland Dartmouth College
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
BlurLab simulate the full 3D light field of a fluorescence microscope, perform TIRF, FRAP or Z-slicing, add noise, and generate output images.It is an easy to use platform for generating simulated fluorescence microscopy data for use in mechanistic modeling visualization, image comparison, and hypothesis testing. The software accepts the 3D positions, intensities and labels of fluorescing objects that are produced by an underlying mechanistic model and transforms them into high quality simulated images. The program includes full 3D convolution with realistic (or even measured) point spread functions; inclusion of thermal, shot and custom noise spectra; simulations of mean and fully stochastic photobleacing; the ability to view scenes in wide-field and TIRF, and perform Z-slicing; and the ability simulate FRAP experiments.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
