MicroSNiPer – Prediction of SNP effects on putative microRNA targets

MicroSNiPer

:: DESCRIPTION

MicroSNiPer is a web-based application which predicts the impact of a SNP on putative microRNA targets.

::DEVELOPER

Bioinformatics and Next Generation Sequencing Group; Max Planck Institute of Immunobiology and Epigenetics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Hum Mutat. 2010 Nov;31(11):1223-32. doi: 10.1002/humu.21349. Epub 2010 Oct 7.
MicroSNiPer: a web tool for prediction of SNP effects on putative microRNA targets.
Barenboim M1, Zoltick BJ, Guo Y, Weinberger DR.

SECA – Perform SNP Effect Concordance Analysis using Genome-wide Association Summary

SECA

:: DESCRIPTION

SECA (SNP Effect Concordance Analysis) is a user-friendly web-based application to perform SNP effect concordance analysis using GWA summary results.

::DEVELOPER

the Statistical and Genomic Epidemiology Laboratory (SGEL)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
R

:: DOWNLOAD

SECA

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 17. [Epub ahead of print]
SECA: SNP effect concordance analysis using genome-wide association summary results.
Nyholt DR.

GS3 2.2.3 – Estimates Fixed and Random Effects, Breeding Values and SNP effects for Genomic Selection

GS3 2.2.3

:: DESCRIPTION

GS3 (Genomic Selection / Gibbs Sampling / Gauss Seidel) is a program that estimates fixed and random effects, breeding values and SNP effects for genomic selection. It includes normal, mixture, or double exponential distributions for SNP effects, i.e. GBLUP, the so-called BayesCPi, and the Bayesian Lasso. It allows estimation of the variances and effects of SNPs, polygenic and environmental effects, and also the inclusion of heterogeneous variances as for the analysis of DYD’s

::DEVELOPER

Andrés Legarra , andres dot legarra at toulouse point inra punto fr , Anne Ricard, Olivier Filangi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux

:: DOWNLOAD

GS3

:: MORE INFORMATION