Fit3D v005 – Small Structural Motif Screening in Proteins and further analyses

Fit3D v005

:: DESCRIPTION

Fit3D is a command line software tool to search for small structural motifs of amino acids in target proteins. It can also be used for batch-processing by applying to a large number of target structures.

::DEVELOPER

Fit3D team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/Windows
  • Java

:: DOWNLOAD

 Fit3D

:: MORE INFORMATION

Citation:

Fit3D – A web application for highly accurate screening of spatial residue patterns in protein structure data.
Kaiser F, Eisold A, Bittrich S, Labudde D.
Bioinformatics. 2015 Oct 30. pii: btv637.

PATHGROUPS – Rapid Small Phylogeny

PATHGROUPS

:: DESCRIPTION

The PATHGROUPS program optimizes the gene order at ancestral nodes of a given phylogeny, given the order in modern genomes.

::DEVELOPER

Sankoff Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 PATHGROUPS

:: MORE INFORMATION

Citaion

On the PATHGROUPS approach to rapid small phylogeny.
Zheng C, Sankoff D.
BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S4.