SITES 1.1

:: DESCRIPTION

SITES is a computer program for the analysis of comparative DNA sequence data. Basic analyses include: data summaries by polymorphism class; polymorphism estimates within and between groups (species); estimates of migration, neutral model, and recombination parameters; and linkage disequilibrium analyses. SITES is primarily intended for data sets with multiple closely related sequences. It is especially useful when multiple sequences have been obtained from each of one or several closely related populations or species.

::DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows / Linux / MacOsX

:: DOWNLOAD

:: MORE INFORMATION

Citation:

GPS-SNO 1.0

:: DESCRIPTION

GPS-SNO is a novel software for the prediction of S-nitrosylation sites. The leave-one-out validation and 4-, 6-, 8-, 10-fold cross-validations were calculated to evaluate the prediction performance and system robustness. By comparison, the performance of GPS 3.0 algorithm was much better than several other approaches, with an accuracy of 75.70%, a sensitivity of 55.32% and a specificity of 80.11% under the low threshold.

::DEVELOPER

The CUCKOO Workgroup

:: SCREENSHOTS

:: REQUIREMENTS

WIndows / Linux / MacOsX
Java

:: DOWNLOAD

GPS-SNO

:: MORE INFORMATION

Citation

Yu Xue, Zexian Liu, Xinjiao Gao, Changjiang Jin, Longping Wen, Xuebiao Yao, and Jian Ren.
GPS-SNO: Computational prediction of protein S-nitrosylation sites with a modified GPS algorithm.
Plos One. 2010;5(6):e11290

Tag: SITES

SITES 1.1 – Analysis of Comparative DNA Sequence data

SITES 1.1

GPS-SNO 1.0 – S-nitrosylation Sites Prediction

GPS-SNO 1.0