MultiBreak-SV – Detect Structural Variants from Single Molecule Sequencing data

MultiBreak-SV

: DESCRIPTION

MultiBreak-SV is a software for structural variation analysis from next-generation paired end data, third-generation long read data, or data from a combination of sequencing platforms.

::DEVELOPER

Raphael Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Java

:: DOWNLOAD

 MultiBreak-SV

:: MORE INFORMATION

Citation:

Characterization of Structural Variants with Single Molecule and Hybrid Sequencing Approaches.
Ritz A, Bashir A, Sindi S, Hsu D, Hajirasouliha I, Raphael BJ.
Bioinformatics. 2014 Oct 28. pii: btu714.

ZoomX 1.0.0 – Single Molecule Based Rearrangement Analysis with Linked Read Sequencing

ZoomX 1.0.0

:: DESCRIPTION

ZoomX analyzes single molecule whole genome sequencing data sets to identify long-range rearrangements.

::DEVELOPER

Ji Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Python

:: DOWNLOAD

ZoomX

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2018 Feb 28;46(4):e19. doi: 10.1093/nar/gkx1193.
Identification of large rearrangements in cancer genomes with barcode linked reads.
Xia LC, Bell JM, Wood-Bouwens C, Chen JJ, Zhang NR, Ji HP.