SIMPLEX 2.0
:: DESCRIPTION
SIMPLEX is a cloud-enabled autonomous analysis pipeline, which comprises the complete exome analysis workflow. The pipeline combines several in-house developed and published applications to perform the following steps: (a) initial quality control, (b) intelligent data filtering and pre-processing, (c) sequence alignment to a reference genome, (d) SNP and DIP detection, (e) functional annotation of variants using different approaches, and (f) detailed report generation during various stages of the workflow.
::DEVELOPER
the Division of Bioinformatics, Innsbruck Medical University
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/Linux /MacOsX
- Java
- VirtualBox.
:: DOWNLOAD
:: MORE INFORMATION
Citation
SIMPLEX: cloud-enabled pipeline for the comprehensive analysis of exome sequencing data.
Fischer M, Snajder R, Pabinger S, Dander A, Schossig A, Zschocke J, Trajanoski Z, Stocker G.
PLoS One. 2012;7(8):e41948. doi: 10.1371/journal.pone.0041948.